| Name | Version | Summary | date |
| sequana |
0.19.2 |
A set of standalone application and pipelines dedicated to NGS analysis |
2025-07-28 11:54:30 |
| seqtk-rs |
0.2.0 |
This is a sequence processing tool written in Rust for manipulating FASTA/FASTQ files. Pure rust version of seqtk. |
2025-07-22 01:24:03 |
| buisciii-tools |
2.2.12 |
Tools for managing and resolution of buisciii services. |
2025-07-18 10:20:37 |
| geofetch |
0.12.8 |
Downloads data and metadata from GEO and SRA and creates standard PEPs. |
2025-07-11 17:25:37 |
| multiqc |
1.30 |
Create aggregate bioinformatics analysis reports across many samples and tools |
2025-07-09 10:24:38 |
| nf-core |
3.3.2 |
Helper tools for use with nf-core Nextflow pipelines. |
2025-07-08 09:51:27 |
| vfind |
0.2.0 |
Simple variant finding utilities for NGS data |
2025-02-24 23:07:26 |
| spritefridge |
1.3.4 |
A python toolbox for processing SPRITE-seq within the cooler universe |
2025-01-19 12:59:35 |
| WonderPeaks |
0.1.10 |
functions for peakcalling enriched peaks in ChIP-seq and untranslateed regions in 3'RNA-seq in Fungi |
2025-01-17 19:15:59 |
| bedboss |
0.6.0 |
Pipelines for genomic region file to produce bed files, and it's statistics |
2025-01-17 16:49:17 |
| WonderPeaks-preprocessing |
0.2.3 |
preprocessing functions for ChIP-seq and RNA-seq in Fungi with WonderPeaks |
2025-01-17 01:49:05 |
| pipestat |
0.12.0 |
A pipeline results reporter |
2025-01-16 22:22:53 |
| looper |
2.0.0 |
A pipeline submission engine that parses sample inputs and submits pipelines for each sample. |
2025-01-16 21:38:50 |
| somaticseq |
3.10.0 |
SomaticSeq: An ensemble approach to accurately detect somatic mutations using SomaticSeq |
2025-01-01 23:58:14 |
| geniml |
0.5.2 |
Genomic interval toolkit |
2024-12-03 19:18:58 |
| bedspec |
0.6.0 |
An HTS-specs compliant BED toolkit. |
2024-12-02 22:23:08 |
| sequana-mapper |
1.3.1 |
A multi-sample mapper to map reads onto a reference |
2024-11-22 09:21:40 |
| cutseq |
0.0.57 |
Automatically cut adapter / barcode / UMI from NGS data |
2024-11-17 05:32:20 |
| hydra-genetics |
3.1.1 |
Helper tools for use with hydra-genetics pipelines. |
2024-11-06 07:35:56 |
| sequana-fastqc |
1.9.0 |
A multi-sample fastqc pipeline from Sequana project |
2024-10-31 21:50:31 |